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本單位提供穩定且高效能的大數據分析與科學計算基礎設施，以及雲端服務，促進了許多團隊的研究成果。透過這樣的合作，促進了許多傑出的研究成果完成和發表。列舉如下：

論文發表
合作專案

論文發表

●	( 2024 )

在本單位計算支援之下，2024年發表論文研究成果

序號	作者	標題	論文連結
1	Lee, C., Saw, J., Chen, E. H., Wang, C., Uchihashi, T., & Chen, R. P. (2024).	The Positively Charged Cluster in the N-terminal Disordered Region may Aﬀect Prion Protein Misfolding:Cryo-EM Structure of Hamster PrP(23–144) Fibrils. Journal of Molecular Biology, 436(11),168576.	https://doi.org/10.1016/j.jmb.2024.168576
2	Chiang, W. T., Chang, Y., Hui, W., Chang, S., Liao, C., Chang, Y., Chen, C., Wang, W., Lai, C.,Wang, C., Luo, S., Huang, Y., Chou, S., Horng, T., Hou, M., Muench, S. P., Chen, R., Tsai, M., & Hu, N. (2024).	Structural basis and synergism of ATP and Na+ activation in bacterial K+ uptake system KtrAB. Nature Communications, 15(1).	https://doi.org/10.1038/s41467-024-48057-y
3	Chang, C. M., Wang, S., Wang, C., Pang, A. H., Yang, C., Chang, Y., Wu, W., & Tsai, M. (2024).	A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.Communications Chemistry, 7(1).	https://doi.org/10.1038/s42004-024-01129-y
4	Yeh, M., Hsu, N., Chu, H., Yang, C., Hsu, P., Chou, C., Shie, J., Lee, W., Ho, M., & Lo, K.(2024).	Dual protection by Bcp1 and Rkm1 ensures incorporation of uL14 into pre-60Sribosomal subunits. The Journal of Cell Biology, 223(8).	https://doi.org/10.1083/jcb.202306117
5	Saju, A., Chen, P., Weng, T., Tsai, S., Tanaka, A., Tseng, Y., Chang, C., Wang, C., Shimamoto, Y., & Hsia, K. (2024).	HURP binding to the vinca domain of β-tubulin accounts for cancer drug resistance. Nature Communications, 15(1).	https://doi.org/10.1038/s41467-024-53139-y
6	Wang CH, Wu KP, Chang YC,	Cryo-EM structure of 1.51 Angstroms mouse heavy-chain apoferritin in 290 nm gold foil holes(HexAuFoil). EMPIAR (2024)
7	Tsou, J., Tsou, C., Wang, C., Ko, A. A., Wang, Y., Liang, H., Sun, J., Huang, K., Ko, T., Lin, S., & Wang, Y. (2024).	Site-Specific histidine Aza-Michael addition in proteins enabled by a Ferritin-Based metalloenzyme. Journal of the American Chemical Society.	https://doi.org/10.1021/jacs.4c14446
8	Chiang, W. T., Chang, Y., Hui, W., Chang, S., Liao, C., Chang, Y., Chen, C., Wang, W., Lai, C., Wang, C., Luo, S., Huang, Y., Chou, S., Horng, T., Hou, M., Muench, S. P., Chen, R., Tsai, M., & Hu, N. (2024b).	Structural basis and synergism of ATP and Na+ activation in bacterial K+uptake system KtrAB. Nature Communications, 15(1).	https://doi.org/10.1038/s41467-024-48057-y
9	Dang, T., EswarKumar, N., Tripathi, S. K., Yan, C., Wang, C., Cao, M., Paul, T. K., Agboluaje, E. O., Xiong, M. P., Ivanov, I., Ho, M., & Zheng, Y. G. (2024).	Oligomerization of protein arginine methyltransferase 1 and its functional impact on substrate arginine methylation. Journal of Biological Chemistry, 107947.	https://doi.org/10.1016/j.jbc.2024.107947
10	Tsou, J., Tsou, C., Wang, C., Ko, A. A., Wang, Y., Liang, H., Sun, J., Huang, K., Ko, T., Lin, S., & Wang, Y. (2024b).	Site-Specific histidine Aza-Michael addition in proteins enabled by a Ferritin-Based metalloenzyme. Journal of the American Chemical Society.	https://doi.org/10.1021/jacs.4c14446
11	Aguilar, M., Alpat, B., Ambrosi, G., Anderson, H., Arruda, L., Attig, N., Bagwell, C., Barao, F.,Barbanera, M., Barrin, L., Bartoloni, A., Battiston, R., Bayyari, A., Belyaev, N., Bertucci, B., Bindi, V., Bollweg, K., Bolster, J., Borchiellini, M., . . . Kounine, A. (2024).	Properties of cosmic deuterons measured by the Alpha magnetic spectrometer. Physical Review Letters, 132(26).	https://doi.org/10.1103/physrevlett.132.261001
12	Abac, A. G., Abbott, R., Abouelfettouh, I., Acernese, F., Ackley, K., Adhicary, S., Adhikari, N.,Adhikari, R. X., Adkins, V. K., Agarwal, D., Agathos, M., Abchouyeh, M. A., Aguiar, O. D., Aguilar, I., Aiello, L., Ain, A., Ajith, P., Akçay, S., Akutsu, T., . . . Basak, S. (2024).	Observation of Gravitational Waves from the Coalescence of a 2.5–4.5 M ⊙ Compact Object and a Neutron Star. The Astrophysical Journal Letters, 970(2), L34.	https://doi.org/10.3847/2041-8213/ad5beb
13	Abbott, R., Abbott, T. D., Acernese, F., Ackley, K., Adams, C., Adhikari, N., Adhikari, R. X., Adya, V. B., Aﬀeldt, C., Agarwal, D., Agathos, M., Agatsuma, K., Aggarwal, N., Aguiar, O. D., Aiello, L., Ain, A., Ajith, P., Albanesi, S., Allocca, A., . . . Beveridge, D. (2024).	GWTC-2.1: Deep extended catalog of compact binary coalescences observed by LIGO and Virgo during the first half of the third observing run. Physical Review. D/Physical Review. D., 109(2).	https://doi.org/10.1103/physrevd.109.022001
14	Aguilar, M., Alpat, B., Ambrosi, G., Anderson, H., Arruda, L., Attig, N., Bagwell, C., Barao, F., Barbanera, M., Barrin, L., Bartoloni, A., Battiston, R., Bayyari, A., Belyaev, N., Bertucci, B., Bindi, V., Bollweg, K., Bolster, J., Borchiellini, M., . . . Kounine, A. (2024).	Properties of cosmic deuterons measured by the Alpha magnetic spectrometer. Physical Review Letters, 132(26).	https://doi.org/10.1103/physrevlett.132.261001
15	Abac, A. G., Abbott, R., Abe, H., Abouelfettouh, I., Acernese, F., Ackley, K., Adamcewicz, C., Adhicary, S., Adhikari, N., Adhikari, R. X., Adkins, V. K., Adya, V. B., Aﬀeldt, C., Agarwal, D., Agathos, M., Aguiar, O. D., Aguilar, I., Aiello, L., Ain, A., . . . Basak, S. (2024).	Ultralight vector dark matter search using data from the KAGRA O3GK run. Physical Review. D/Physical Review. D., 110(4).	https://doi.org/10.1103/physrevd.110.042001
16	Bajpai, R., Tomaru, T., Suzuki, T., Yamamoto, K., Ushiba, T., & Honda, T. (2024).	Study of Newtonian noise from the KAGRA cooling system. PoS, 115.	https://doi.org/10.22323/1.441.0115
17	Ushiba, T. (2024).	Status of the underground gravitational wave detector KAGRA. PoS, 116.	https://doi.org/10.22323/1.441.0116
18	Fletcher, C., Wood, J., Hamburg, R., Veres, P., Hui, C. M., Bissaldi, E., Briggs, M. S., Burns, E., Cleveland, W. H., Giles, M. M., Goldstein, A., Hristov, B. A., Kocevski, D., Lesage, S., Mailyan, B., Malacaria, C., Poolakkil, S., Von Kienlin, A., Wilson-Hodge, C. A., . . . Zweizig, J. (2024).	A Joint Fermi-GBM and Swift-BAT Analysis of Gravitational-wave Candidates from the Third Gravitational-wave Observing Run. The Astrophysical Journal, 964(2), 149.	https://doi.org/10.3847/1538-4357/ad1eed
19	Abbott, R., Abe, H., Acernese, F., Ackley, K., Adhicary, S., Adhikari, N., Adhikari, R. X., Adkins, V. K., Adya, V. B., Aﬀeldt, C., Agarwal, D., Agathos, M., Aguiar, O. D., Aiello, L., Ain, A., Ajith, P., Akutsu, T., Albanesi, S., Alfaidi, R. A., . . . Zweizig, J. (2024).	Search for gravitational-lensing signatures in the full third observing run of the LIGO–Virgo network. The Astrophysical Journal, 970(2), 191.	https://doi.org/10.3847/1538-4357/ad3e83
20	Lin, Y., & Wu, M. (2024).	Supernova-Neutrino-Boosted Dark Matter from All Galaxies. Physical Review Letters, 133(11).	https://doi.org/10.1103/physrevlett.133.111004
21	Abbar, S., Wu, M., & Xiong, Z. (2024a).	Physics-informed neural networks for predicting the asymptotic outcome of fast neutrino flavor conversions. Physical Review. D/Physical Review. D., 109(4).	https://doi.org/10.1103/physrevd.109.043024
22	Abbar, S., Wu, M., & Xiong, Z. (2024).	Application of neural networks for the reconstruction of supernova neutrino energy spectra following fast neutrino flavor conversions. Physical Review. D/Physical Review. D., 109(8).	https://doi.org/10.1103/physrevd.109.083019
23	Riehn, F., Fedynitch, A., & Engel, R. (2024).	Sibyll(Star).	https://doi.org/10.1016/j.astropartphys.2024.102964
24		Observation of Declination Dependence in the Cosmic Ray Energy Spectrum, Telescope Array Collaboration•R.U. Abbasi(Illinois U., Chicago) et al. (Jun 12, 2024), e-Print: 2406.08612 [astro-ph.HE]
25	Woodley, W., Fedynitch, A., & Piro, M. (2024).	Cosmic ray muons in laboratories deep underground. Physical Review. D/Physical Review. D., 110(6).	https://doi.org/10.1103/physrevd.110.063006
26	TW Chiu,	Symmetries of spatial correlators of light and heavy mesons in high temperature lattice QCD, Physical Review D 110 (1), 014502, July 2024
27	Tsai, YL., Wu, TR., Yen, E. et al.	Storm surge induced by Tropical Storm Pabuk (2019) and its impact by track variation scenarios on the Thailand coast. Nat Hazards (2024).	https://doi.org/10.1007/s11069-024-06717-8
28	Catumba, G., Hiraguchi, A., Hou, W., Jansen, K., Kao, Y., Lin, C. D., Ramos, A., & Sarkar, M.(2024).	Lattice study of SU(2) gauge theory coupled to four adjoint Higgs fields. Physical Review Research, 6(4).	https://doi.org/10.1103/physrevresearch.6.043172

●	( 2023 )

在本單位計算支援之下，2023年發表論文研究成果

序號	作者	標題	論文連結
1	Jiang, HW., Wu, HY., Wang, CH. et al.	A structure of the relict phycobilisome from a thylakoid-free cyanobacterium. Nat Commun 14, 8009 (2023).	https://doi.org/10.1038/s41467-023-43646-9
2	Luo, SC., Yeh, MC., Lien, YH. et al.	A RAD51–ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination. Nat Commun 14, 4993(2023).	https://doi.org/10.1038/s41467-023-40672-5
3	Liao, CC., Wang, YS., Pi, WC. et al.	Structural convergence endows nuclear transport receptor Kap114p with a transcriptional repressor function toward TATA-binding protein. Nat Commun 14, 5518 (2023).	https://doi.org/10.1038/s41467-023-41206-9
4	Chiu, YC., Yeh, MC., Wang, CH. et al.	Structural basis for calcium-stimulating pore formation of Vibrio α-hemolysin. Nat Commun 14, 5946 (2023).	https://doi.org/10.1038/s41467-023-41579-x
5	Li, S., Hsieh, KY., Kuo, CI. et al.	A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine. Nat Commun 14, 7340 (2023).	https://doi.org/10.1038/s41467-023-43035-2
6	Lu, KJ., Chang, CW., Wang, CH. et al.	An ATP-sensitive phosphoketolase regulates carbon fixation in cyanobacteria. Nat Metab 5, 1111–1126 (2023).	https://doi.org/10.1038/s42255-023-00831-w
7	Chen NC, Wang CH, Yoshimura M, Yeh YQ, Guan HH, Chuankhayan P, Lin CC, Lin PJ, Huang YC, Wakatsuki S, Ho MC, Chen CJ, Nature Communications (2023)	Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions.
8	Hsieh JY, Chen KC, Wang CH, Liu GY, Ye JA, Chou YT, Lin YC, Lyu CJ, Chang RY, Liu YL, Li YH, Lee MR, Ho MC, Hung HC,	Suppression of the human malic enzyme 2 modifies energy metabolism and inhibits cellular respiration., Communications Biology (2023)
9		AMS Collaboration, Temporal Structures in Positron Spectra and Charge-Sign Eﬀects in Galactic Cosmic Rays Phys. Rev. Lett. 131, 151002 (2023)
10		AMS Collaboration, Properties of Cosmic-Ray Sulfur and Determination of the Composition of Primary Cosmic-Ray Carbon, Neon, Magnesium, and Sulfur: Ten-Year Results from the Alpha Magnetic Spectrometer, Phys. Rev. Lett. 130, 211002 (2023)
11		AMS Collaboration, Temporal Structures in Electron Spectra and Charge Sign Eﬀects in Galactic Cosmic Rays Phys. Rev. Lett. 130, 161001 (2023)
12	T. Akutsu et al. KAGRA collaboration, 2023,	“Correction to: Input optics systems of the KAGRA detector during O3GK”, Progress of Theoretical and Experimental Physics, 2023(5), 2. (SCIE) (IF: 7.492; SCI ranking: 14%,13.8%)
13	H. Abe et al. KAGRA collaboration, 2023,	“Noise subtraction from KAGRA O3GK data using Independent Component Analysis”, Classical and Quantum Gravity, 40(8), 085015. (SCIE) (IF:3.853; SCI ranking: 34.8%,32.6%,34.5%,52.6%)
14	R. Abbott et al. LIGO Scientific Collaboration, Virgo Collaboration and KAGRA Collaboration, 2023,	“Population of Merging Compact Binaries Inferred Using Gravitational Waves through GWTC-3”, Physical Review X, 13(1), 011048. (SCIE) (IF: 14.417; SCI ranking: 7%)
15	The LIGO Scientific Collaboration, the Virgo Collaboration and KAGRA Collaboration, 2023,	“Open Data from the Third Observing Run of LIGO, Virgo, KAGRA, and GEO”, Astrophysical Journal, Supplement Series, R. Abbott et al 2023 ApJS 267 29, DOI 10.3847/1538-4365/acdc9f
16	The KAGRA Collaboration, 2023,	“Performance of the KAGRA detector during the first joint observation with GEO 600 (O3GK) ”, Prog. Their. Exp. Phys. 2023 10A101(35 pages), DOI:10.1093/ptep/ptac093
17	R. Abbott et al. (LIGO Scientific Collaboration, Virgo Collaboration, and KAGRA Collaboration),	“GWTC-3: Compact Binary Coalescences Observed by LIGO and Virgo during the Second Part of the Third Observing Run”, Phys. Rev. X 13, 041039
18	Lin Yen-Hsun*, Tsai Tsung-Han, Lin Guey-Lin, Wong Henry Tsz-King, Wu Meng-Ru, 2023,	“Signatures of afterglows from light dark matter boosted by supernova neutrinos in current and future large underground detectors”, Physical Review D, 108(8), 083013. (SCIE) (IF: 5.407;SCI ranking: 23.2%,24.1%)
19	Manu George*, Chun-Yu Lin, Meng-Ru Wu, Tony G. Liu, Zewei Xiong, 2023,	“COSEν: A collective oscillation simulation engine for neutrinos”, Computer Physics Communications, 283, 108588. (SCIE) (IF: 4.39; SCI ranking: 31.3%,3.6%)
20	Yen-Hsun Lin*, Wen-Hua Wu, Meng-Ru Wu, Henry Tsz-King Wong, 2023,	“Searching for Afterglow: Light Dark Matter Boosted by Supernova Neutrinos”, Physical Review Letters, 130(11), 111002. (SCIE) (IF: 9.161; SCI ranking: 8.1%)
21	Noémie Globus, Anatoli Fedynitch, Roger Blandford (2023),	Extreme Energy Cosmic Rays "Treasure Maps": a new methodology to unveil the nature of cosmic accelerators, ICRC2023(PoS e-print,	https://arxiv.org/pdf/2308.06842)
22	Keito Watanabe, Anatoli Fedynitch, Francesca Capel, Hiroyuki Sagawa (2023)	Overcoming Challenges in Finding Ultra-High-Energy Cosmic Ray Sources with a Bayesian Hierarchical Framework: Impact of the Galactic magnetic field and mass composition, PoS ICRC2023(2023) 479 • Contribution to: ICRC2023, 479
23	Riehn, Felix and Engel, Ralph and Fedynitch, Anatoli,	Sibyll*: ad-hoc modifications for an improved description of muon data in extensive air showers, Proceedings of 38th International Cosmic Ray Conference, PoS(ICRC2023)
24	Kozynets, Tetiana and Fedynitch, Anatoli and Koskinen, David Jason (2023),	Angular distributions of atmospheric leptons via two-dimensional matrix cascade equations, PoS(ICRC2023), doi = "10.22323/1.444.0516"
25	Dembinski, Hans and Fedynitch, Anatoli and Prosekin, Anton (2023),	Chromo: An event generator frontend for particle and astroparticle physics, PoS(ICRC2023), doi = "10.22323/1.444.0189"
26	Kozynets, Tetiana and Fedynitch, Anatoli and Koskinen, D. Jason (2023),	Atmospheric Lepton Fluxes via Two-Dimensional Matrix Cascade Equations, arXiv:2306.15263
27	R.U. Abbasi and A. Fedynitch et.al (2023),	The energy spectrum of cosmic rays measured by the Telescope Array using 10 years of fluorescence detector data, Astroparticle Physics, Volume 151, Sep. 2023
28	Yanez, Juan Pablo and Fedynitch, Anatoli (2023),	Data-driven muon-calibrated neutrino flux, Phys. Rev. D, 107(12), pp.123037
29	P.-Y. Lee and E. Yen et al., 2023,	An investigation into the impact of volumetric rescanning and fractionation treatment on dose homogeneity in liver cancer proton therapy, Journal of Radiation Research, 2023, pp.1-9.	https://doi.org/10.1093/jrr/rrad093

合作專案

●	Large Hadron Collider (LHC) experiments (ATLAS and CMS) and WLCG

●	Alpha Magnetic Spectrometer (AMS)

●	Gravitational Wave detection (KAGRA/LIGO/Virgo)

●	TEXONO experiment

●	Proton cancer therapy

●	Deeper understanding to natural disaster

●	xBrain/SYNAPSE

●

CryoEM

●	Next Generation Sequence

●	Bioinformatics

●	Astronomy Simulation of new-born stellar systems

●

Cosmology

●	Astrophysics

●	Soundscape Enhance capacity of ecology and biodiversity monitoring by dynamics of soundscape

●	BioSAXS Synchrontron Computing

●	Quake Catcher Network (QCN) Earthquake sensor network construction, data management and archive

●	Machine learning and AI research and application

聯繫資訊：高效能核心科學計算中心NSTCCore Email: dicos-support@twgrid.org

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