| 軟體名稱 |
說明 |
運用領域 |
CryoSARC 註
|
CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines. |
Biomedical |
| RELION |
relion (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a software package that employs an empirical Bayesian approach for electron cryo-microscopy (cryo-EM) structure determination. |
Biomedical |
| cisTEM |
cisTEM is user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them. |
Biomedical |
| JupyterLAB |
JupyterLab is the next-generation web-based user interface for Project Jupyter.
Its flexible interface allows users to configure and arrange workflows in data science, scientific computing, computational journalism, and machine learning. |
Machine Learning & data analysis |
| AlphaFold |
AlphaFold is an AI system developed by DeepMind that predicts a protein’s 3D structure from its amino acid sequence. |
Biomedical |
| RoseTTAFold |
a software tool that uses deep learning to quickly and accurately predict protein structures based on limited information. |
Biomedical |
| Triton |
Triton 是針對推斷最佳化的多架構開放原始碼軟體。 它支援熱門的機器學習架構，例如 TensorFlow、ONNX Runtime、PyTorch、NVIDIA TensorRT 等等。 它可用於您的 CPU 或 GPU 工作負載。 |
Machine Learning |
| IMOD |
IMOD is a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections. |
Biomedical |
| OpenACC |
OpenACC (開源加速器（ Open Accelerators）的簡稱)，一個平行處理程式設計標準，是為了簡化異構計算（CPU/GPU）系統的平行程式設計。 |
CPU/GPU Parrallel Computing |
| Octave |
Mathematics-oriented syntax with built-in 2D/3D plotting and visualization tools |
Data Visualization |
| Ovito |
OVITO is a visualization and analysis software for output data generated in molecular dynamics, atomistic Monte-Carlo and other particle-based simulations. |
Data Visualization |
| Dynamo |
This package is around 8Gb as it includes the standalone Matlab MCR libraries of Matlab R2021a. The tar file can be installed both as standalone or inside the Matlab environment. |
Biomedical |
| Deepmd-kit |
DeePMD-kit is a package written in Python/C++, designed to minimize the effort required to build deep learning based model of interatomic potential energy and force field and to perform molecular dynamics (MD). |
Molecular Dynamics |
| MAML |
MAML(Model-Agnostic-Meta-Learning) Toolkit |
Machine Learning & Data Analysis |
| pvServer |
pvServer is a 3GPP/2 standards compliant multimedia server that provides streaming and broadcast services to mobile devices. |
|
| Paraview Client |
Open source post-processing visualization engine |
Data Visualization |
| MATLAB |
Programming and numeric computing platform |
Data analysis |
